Please Jesus tell me it isn't rod knock
So before I get started, I am well aware that this is probably rod knock, this is a last hope that someone tells me something to change my mind.
I am not able to work on my car at my apartment so now that I am home from college for xmas I decided to do some maintenance on my own. I had an oil leak from the front valve cover so I changed the gasket and went ahead and replaced the plugs, as it has 123k and I just purchased it from a kid who had it 6 months and told me he never even changed the oil (didn't tell me until 3 weeks after I paid him). Basically the only thing that was done was change the plugs and also the radiator hoses. Beyond that I also removed the resonator from the stock intake arm and plugged it. <-- my dad did this and I do not know how it was plugged, looked secure when I saw it. So I put everything back together and start her up. She started perfectly and died after 5-7sec. I had removed the maf so I figured this was normal. Started back up and TERRIBLE knocking noise from what seems to be cylinder #2 area. I did not remove the rear valve cover at any time. I inspected all the plugs and wires and everything seemed fine. The only thing I can think of was something fell into the cylinders that neither of us noticed (we didn't cover it when we removed the plenum :/ )
Is there ANYTHING I can check that could cause this knocking temporarily? I know its a shot in the dark, but its all I have right now.